R/gf_functions.R
gf_density_2d.Rd
Perform a 2D kernel density estimation using MASS::kde2d()
and
display the results with contours. This can be useful for dealing with
overplotting. This is a 2D version of geom_density()
. geom_density_2d()
draws contour lines, and geom_density_2d_filled()
draws filled contour
bands.
gf_density_2d(
object = NULL,
gformula = NULL,
data = NULL,
...,
alpha,
color,
group,
linetype,
linewidth,
contour = TRUE,
n = 100,
h = NULL,
lineend = "butt",
linejoin = "round",
linemitre = 1,
xlab,
ylab,
title,
subtitle,
caption,
geom = "density_2d",
stat = "density_2d",
position = "identity",
show.legend = NA,
show.help = NULL,
inherit = TRUE,
environment = parent.frame()
)
gf_density_2d_filled(
object = NULL,
gformula = NULL,
data = NULL,
...,
alpha,
color,
group,
linetype,
linewidth,
contour = TRUE,
n = 100,
h = NULL,
lineend = "butt",
linejoin = "round",
linemitre = 1,
xlab,
ylab,
title,
subtitle,
caption,
geom = "density_2d_filled",
stat = "density_2d_filled",
position = "identity",
show.legend = NA,
show.help = NULL,
inherit = TRUE,
environment = parent.frame()
)
gf_density2d(
object = NULL,
gformula = NULL,
data = NULL,
...,
alpha,
color,
group,
linetype,
linewidth,
contour = TRUE,
n = 100,
h = NULL,
lineend = "butt",
linejoin = "round",
linemitre = 1,
xlab,
ylab,
title,
subtitle,
caption,
geom = "density2d",
stat = "density2d",
position = "identity",
show.legend = NA,
show.help = NULL,
inherit = TRUE,
environment = parent.frame()
)
gf_density2d_filled(
object = NULL,
gformula = NULL,
data = NULL,
...,
alpha,
color,
group,
linetype,
linewidth,
contour = TRUE,
n = 100,
h = NULL,
lineend = "butt",
linejoin = "round",
linemitre = 1,
xlab,
ylab,
title,
subtitle,
caption,
geom = "density2d_filled",
stat = "density_2d_filled",
position = "identity",
show.legend = NA,
show.help = NULL,
inherit = TRUE,
environment = parent.frame()
)
When chaining, this holds an object produced in the earlier portions of the chain. Most users can safely ignore this argument. See details and examples.
A formula with shape y ~ x
.
Faceting can be achieved by including |
in the formula.
The data to be displayed in this layer. There are three options:
If NULL
, the default, the data is inherited from the plot
data as specified in the call to ggplot()
.
A data.frame
, or other object, will override the plot
data. All objects will be fortified to produce a data frame. See
fortify()
for which variables will be created.
A function
will be called with a single argument,
the plot data. The return value must be a data.frame
, and
will be used as the layer data. A function
can be created
from a formula
(e.g. ~ head(.x, 10)
).
Additional arguments. Typically these are
(a) ggplot2 aesthetics to be set with attribute = value
,
(b) ggplot2 aesthetics to be mapped with attribute = ~ expression
, or
(c) attributes of the layer as a whole, which are set with attribute = value
.
Opacity (0 = invisible, 1 = opaque).
A color or a formula used for mapping color.
Used for grouping.
A linetype (numeric or "dashed", "dotted", etc.) or a formula used for mapping linetype.
A numerical line width or a formula used for mapping linewidth.
If TRUE
, contour the results of the 2d density
estimation.
Number of grid points in each direction.
Bandwidth (vector of length two). If NULL
, estimated
using MASS::bandwidth.nrd()
.
Line end style (round, butt, square).
Line join style (round, mitre, bevel).
Line mitre limit (number greater than 1).
Label for x-axis. See also gf_labs()
.
Label for y-axis. See also gf_labs()
.
Title, sub-title, and caption for the plot.
See also gf_labs()
.
Use to override the default connection between
geom_density_2d()
and stat_density_2d()
.
Position adjustment, either as a string naming the adjustment
(e.g. "jitter"
to use position_jitter
), or the result of a call to a
position adjustment function. Use the latter if you need to change the
settings of the adjustment.
logical. Should this layer be included in the legends?
NA
, the default, includes if any aesthetics are mapped.
FALSE
never includes, and TRUE
always includes.
It can also be a named logical vector to finely select the aesthetics to
display.
If TRUE
, display some minimal help.
A logical indicating whether default attributes are inherited.
An environment in which to look for variables not found in data
.
a gg object
Positional attributes (a.k.a, aesthetics) are specified using the formula in gformula
.
Setting and mapping of additional attributes can be done through the
use of additional arguments.
Attributes can be set can be set using arguments of the form attribute = value
or
mapped using arguments of the form attribute = ~ expression
.
In formulas of the form A | B
, B
will be used to form facets using
facet_wrap()
or facet_grid()
.
This provides an alternative to
gf_facet_wrap()
and
gf_facet_grid()
that is terser and may feel more familiar to users
of lattice.
Evaluation of the ggplot2 code occurs in the environment of gformula
.
This will typically do the right thing when formulas are created on the fly, but might not
be the right thing if formulas created in one environment are used to create plots
in another.
gf_jitter(avg_drinks ~ age,
alpha = 0.2, data = mosaicData::HELPrct,
width = 0.4, height = 0.4
) |>
gf_density_2d(avg_drinks ~ age, data = mosaicData::HELPrct)
gf_density_2d_filled(avg_drinks ~ age, data = mosaicData::HELPrct, show.legend = FALSE) |>
gf_jitter(avg_drinks ~ age,
alpha = 0.3, data = mosaicData::HELPrct,
width = 0.4, height = 0.4,
color = "white"
)
gf_jitter(avg_drinks ~ age,
alpha = 0.2, data = mosaicData::HELPrct,
width = 0.4, height = 0.4
) |>
gf_density2d(avg_drinks ~ age, data = mosaicData::HELPrct)
gf_density2d_filled(avg_drinks ~ age, data = mosaicData::HELPrct, show.legend = FALSE) |>
gf_jitter(avg_drinks ~ age,
alpha = 0.4, data = mosaicData::HELPrct,
width = 0.4, height = 0.4,
color = "white"
)